Download median expressions for multiple genes in a specified tissue — xQTLdownload_geneMedExp • xQTLbiolinks

Download median expressions for multiple genes in a specified tissue

xQTLdownload_geneMedExp(
  genes = "",
  geneType = "auto",
  tissueSiteDetail = "",
  recordPerChunk = 150
)

Arguments

genes: (character string or a character vector) gene symbols or gencode ids (versioned or unversioned are both supported).
geneType: (character) options: "auto","geneSymbol" or "gencodeId". Default: "auto".
tissueSiteDetail: (character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8 or tissueSiteDetailGTExv7
recordPerChunk: (integer) number of records fetched per request (default: 150).

Value

A data.table object.

Examples

geneMedExp <- xQTLdownload_geneMedExp(genes="LYNX1")
geneMedExp <- xQTLdownload_geneMedExp(genes=c("TP53", "IRF5"))