Query |
|
---|---|
Query basic information (including name, symbol, position and description, etc. ) of genes. |
|
Fetch details of all genes supported in GTEx. |
|
Query sample's details with samples' IDs. |
|
Query sample's details with tissue name |
|
Fetch all details of a specified tissue or all tissues |
|
Query variant in GTEx with variant ID or dbSNP ID |
|
Query varints in GTEx using genome position. |
|
EBIquery_allTerm |
|
extract gene infor of specified genome from gencodeGeneInfoAllGranges |
|
Download |
|
Download details of eGenes (eQTL Genes) for a specified gene or a tissue. |
|
Download significant or unsignificant eQTL associations of a tissue or across all tissues |
|
Download summary statistics of eQTL of a specified gene, variant, tissue or study. |
|
Download summary statistics of eQTL with genome position. |
|
Download normalized expression of gene for a eQTL pair. |
|
Download significant eQTL associations of a specified tissue or across all tissues. |
|
Download normalized gene expression at the sample level in a specified tissue. |
|
Download median expression of all samples for specified genes across tissues. |
|
Download details of sGenes (sQTL Genes) for a specified gene or a tissue. |
|
Download normalized expression of intron for a sQTL pair. |
|
Download significant sQTL associations of a tissue or across all tissues |
|
Retrive SNP pairwise LD from locuscompare database. |
|
Retrive SNP pairwise LD from LDlink database |
|
Visualize |
|
Visualizing annotated variants |
|
Visualizing enriched variants |
|
Box plot with jittered points for showing number and significance of eQTL associations |
|
Boxplot of normalized expression among genotypes for eQTL. |
|
Violin plot of distribution of the gene expression profiles among multiple tissues. |
|
Density plot of expression profiles of the gene |
|
Generate a combined figure including locuszoom and locuscompare plot object. |
|
Dotplot of comparing regional signals between GWAS and xQTL. |
|
Locuszoom plot for visualizing regional signals relative to genomic position with a file of summary statistics |
|
P-N plot |
|
plot quantile-quantile plot with pvalue |
|
Visualization of QTL specificity among multiple cells/tissues. |
|
Boxplot of normalized expression among genotypes for sQTL. |
|
Analyze |
|
annotate variants with genome positon |
|
calculate genomic control inflation factor |
|
Conduct colocalization analysis with trait genes generated from |
|
conduct colocalization analysis with customized QTL data |
|
variant enrichment analysis |
|
Detect sentinel SNPs in a given summary statistis dataset. |
|
Identify trait genes using sentinel SNPs generated from |
|
eQTL-specific analysis |