Download summary statistics data for sQTLs with a specified gene or a tissue

xQTLdownload_sqtlAllAsso(
  genes = "",
  geneType = "auto",
  tissue = "",
  clu_names = "",
  clu_geneid_DF = NULL
)

Arguments

genes: (character) gene symbol or gencode id (versioned or unversioned are both supported).
geneType: (character) options: "auto","geneSymbol" or "gencodeId". Default: "gencodeId".
tissue: (character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8
clu_names: (character) If provided, only the sQTL of clu_names will be downloaded
clu_geneid_DF: (data.frame) If provided, clu-gencode mapping relationship will be loaded from this data.frame.

A data.table object of sQTL dataset.

# \donttest{
sQTL_DT <- xQTLdownload_sqtlAllAsso(genes=c("MMP7","TP53"), tissue="Lung")
# }