Violin plot of distribution of the gene expression profiles among multiple tissues.

xQTLvisual_geneExpTissues(
  gene = "",
  geneType = "auto",
  tissues = "All",
  log10y = FALSE,
  toTissueSite = FALSE,
  axis_text_size = 1.3,
  axis_title_size = 1.3,
  title_size = 1.4,
  xlab_text = "",
  ylab_text = "",
  title_text = ""
)

Arguments

gene: (character) gene symbol or gencode id (versioned or unversioned are both supported).
geneType: (character) options: "auto","geneSymbol" or "gencodeId". Default: "auto".
tissues: A character string or a vector. "All" (default) means that all tissues is included.
log10y: Display values of expression in log scale. Default: FALSE.
toTissueSite: TRUE or FALSE, display all subtissues or tissue Site. Default: TURE.
axis_text_size: (numberic) text size of the axis labels
axis_title_size: (numberic) text size of the axis title
title_size: (numberic) text size of the title of the plot
xlab_text: (character) Lable for x-axis
ylab_text: (character) Lable for x-axis
title_text: (character) Title of the plot

Value

A list containing expression profile and a ggplot object.

Examples

# \donttest{
# Display gene expression in specified tissues.
geneExpTissues <- xQTLvisual_geneExpTissues("TP53", tissues=c("Lung", "Brain","Ovary"))
# }