Download all sc-eQTL associations for a specified gene
xQTLdownload_sc(
gene = "BIN3",
geneType = "geneSymbol",
cell_type = "Astrocytes",
cell_state = "",
qtl_type = "Cell-type eQTL",
study_name = "Bryois2022NN"
)
(character) gene symbol or gencode id (versioned or unversioned are both supported).
(character) options: "auto","geneSymbol" or "gencodeId". Default: "geneSymbol".
(character)cell types supported in the list of study_info from 'xQTLquery_scInfo'
(character)cell states supported in the list of study_info from 'xQTLquery_scInfo'
(character)QTL types supported in the list of study_info from 'xQTLquery_scInfo'
(character)study name supported in the list of study_info from 'xQTLquery_scInfo'
A data.table object
# \donttest{
sceQTL_dt <- xQTLdownload_sc(gene="TP53", cell_type = "B Cell", cell_state="-",
qtl_type="Cell-type-specific eQTL", study_name = "Resztak2022biorxiv")
# }