Download summary statistics of xQTL for a specified gene, default:3'aQTL

xQTLdownload_xqtlAllAsso(
  genes = "",
  geneType = "geneSymbol",
  tissue = "",
  mRNA_refseq = "",
  mRNA_gene_DF = NULL,
  type = "3'aQTL"
)

Arguments

genes: (character) gene symbol or gencode id (versioned or unversioned are both supported).
geneType: (character) options: "auto","geneSymbol" or "gencodeId". Default: "geneSymbol".
tissue: (character) details of tissues in GTEx can be listed using tissueSiteDetailGTExv8
mRNA_refseq: (character) If provided, only the 3'aQTL of mRNA will be downloaded
mRNA_gene_DF: (data.frame) If provided, mRNA-gencode mapping relationship will be loaded from this data.frame.
type: 3'aQTL(default)

A data.table object of xQTL dataset.

# \donttest{
aQTL_DT <- xQTLdownload_xqtlAllAsso(genes=c("MMP7", "EPS15"), tissue="Lung")
# }