Query significant sc-eQTLs for a specified gene

Query significant sc-eQTLs for a specified gene

xQTLquery_sc(
  gene = "BIN3",
  geneType = "geneSymbol",
  cell_type = "Astrocytes",
  cell_state = "-",
  qtl_type = "Cell-type eQTL",
  study_name = "Bryois2022NN"
)

Arguments

gene

(character) gene symbol or gencode id (versioned or unversioned are both supported).

geneType

(character) options: "auto","geneSymbol" or "gencodeId". Default: "geneSymbol".

cell_type

(character)cell types supported in the list of study_info from 'xQTLquery_scInfo'

cell_state

(character)cell states supported in the list of study_info from 'xQTLquery_scInfo'

qtl_type

(character)QTL types supported in the list of study_info from 'xQTLquery_scInfo'

study_name

(character)study name supported in the list of study_info from 'xQTLquery_scInfo'

Value

A data.table object